vertical transmission tomato viruses

Vertical transmission of tomato viruses: A hidden threat to global seed trade

VIRTIGATION partner JKI investigates in a new review how vertical transmission of tomato viruses poses a hidden threat to global seed trade.

Article by Marianna Granatier from the VIRTIGATION project

Background and aims of the study

Tomatoes are among the world’s most important crops, with the tomato seed market currently valued at 1 billion USD. Yet, tomato production faces mounting challenges from environmental stresses and plant diseases, with viruses posing one of the most severe threats.

VIRTIGATION partner JKI has co-authored a new review in the Advances in Virus Research journal, that explores vertical transmission of tomato viruses and its impact on global tomato trade, and the strategies needed to prevent outbreaks and protect crop resilience.

Challenges and strategies of global tomato seed trade

Tomato seed trade is highly complex, involving global networks for breeding, propagation, processing, and packaging. Breeding often occurs in Europe, while parental lines and hybrid seed production are outsourced to regions with favourable climates, such as South America, India, and Asia. Seeds undergo health testing before packaging and distribution through regional subsidiaries worldwide.

However, these extensive trade routes pose phytosanitary risks, as contaminated seeds can introduce pests and pathogens into new regions. To mitigate these risks, international and national bodies, as e.g. the IPPC, enforce strict standards. Measures include seed health testing, certification, and best-practice hygiene protocols. This ensures the safe movement of seeds across borders. For exports, phytosanitary certificates verify that seed consignments meet the import requirements of the destination country.

Industry bodies like the International Seed Federation (ISF) and the American Seed Trade Association (ASTA) also play a key role. They establish guidelines for members, develop seed testing protocols under the International Seed Health Initiative (ISHI), and advocate for industry interests by proposing alternatives to phytosanitary certification.

Despite these measures, viruses such as ToBRFV continue to spread via trade. Transmission occurs through seeds or pollen, and even low seed-to-plant transmission rates can introduce pathogens into new regions, triggering outbreaks under favorable conditions. Understanding how viruses persist and spread through seeds and pollen remains essential for controlling their global spread.

vertical transmission tomato viruses
Tomato seeds © 2025 Shutterstock

Seed and pollen mediated transmission of tomato viruses

Viruses can persist in seed tissues such as the coat, endosperm, and embryo, which strongly affects transmission. Surface contamination on the seed coat often causes mechanical spread during germination or handling. This can usually be reduced through chemical or physical disinfection. In contrast, systemic infections occur when viruses penetrate internal tissues via vascular connections during seed development, enabling transmission to seedlings. True vertical transmission happens only when the embryo is infected, allowing the virus to integrate into the developing plant. Importantly, different viruses vary in their ability to transmit vertically. Viruses inside seed tissues cannot be removed by surface treatments, making precise localization and clean seed sourcing essential.

Pollen-mediated transmission provides an additional pathway for virus spread, enabling both horizontal transmission between plants and vertical transmission to progeny through seeds. Beyond within-species transmission, pollen can also facilitate cross-species spread, allowing viruses to move between closely related or ecologically associated plant species.

The costs of vertical transmission of tomato viruses for production

Vertically transmitted viruses can severely reduce yield and plant vigour, causing smaller fruits, poor quality, or complete crop loss. Marketable yield often declines due to blemishes and deformities, while indirect costs arise from biosecurity measures and phytosanitary controls, such as EU regulations for ToBRFV.

The significance of vertical transmission varies by production system. In temperate regions, growers produce tomatoes typically in protected environments like glasshouses or plastic tunnels, often using hydroponics. These systems allow vector control but involve frequent handling, which increases the risk of mechanically transmitted pathogens such as tobamoviruses (ToBRFV). On the other hand, field-grown tomatoes in warmer climates face greater pressure from insect-transmitted viruses like whitefly-borne begomoviruses (ToLCNDV, TYLCV).

Global seed production adds complexity, as companies grow seeds in multiple regions to meet market demand. Labor-intensive practices such as emasculation and pollination in hybrid seed production create frequent opportunities for contamination. Additionally, seed-borne infections can reduce seed viability, germination, and fruit quality. While early infections often cause severe damage, later infections may result in larger fruits with fewer necrotic seeds. Studies show that timing of infection strongly influences seed health and crop performance.

Economic impacts remain poorly quantified, as most trials compare artificially inoculated plants with controls rather than simulating season-long outbreaks. For example, PepMV studies in UK glasshouses reported no overall yield loss but significant downgrading of fruit quality, while ToBRFV outbreaks caused severe crop damage globally.

vertical transmission tomato viruses
Tomato production © 2025 Shutterstock

Key measures against vertical transmission of tomato viruses

Some of the recommended measures to mitigate the impact of vertically transmitted tomato viruses include:

  • Use Certified Virus-Free Seeds.
  • Seed Testing for Virus Detection (e.g ELISA, PCR, LAMP).
  • Innovative Detection Approaches (e.g. High-Throughput Sequencing (HTS), CRISPR-Based Diagnostics).
  • Virus Inactivation Methods (e.g. chemical disinfection, thermal treatments, ozone-based treatments). Recent VIRTIGATION experiments provide more information about these methods.
  • Cultural Practices (e.g. crop rotation, sanitation, weed control).
  • Genetic Resistance by breeding resistant varieties.
  • Integrated Pest Management (IPM) combining cultural, biological, mechanical, and chemical controls.

A roadmap for sustainable tomato production

The global tomato seed trade is a cornerstone of modern agriculture, yet its complexity creates significant phytosanitary challenges. Despite stringent regulations, industry standards, and advanced diagnostic tools, viruses such as ToBRFV continue to exploit seed and pollen pathways, threatening crop health and market stability.

Therefore, future research on tomato virus transmission should address gaps in understanding the molecular and ecological mechanisms of seed and pollen transmission, as well as the interaction between vertical and horizontal spread. Interdisciplinary collaboration is essential to improve diagnostics, breeding for resistance, and management strategies. Emerging threats include resistance-breaking strains and climate-driven changes in vector distribution, requiring predictive modelling and durable resistance development. Diagnostic challenges persist, particularly in distinguishing infectious from non-infectious particles and ensuring cost-effective, standardized methods.

Proactive management should combine IPM, seed health certification, resistant cultivars, and harmonised regulatory frameworks to strengthen surveillance and containment of tomato virus transmission.

More info about JKI's new review in Advances in Virus Research

The full version of the study in Advances in Virus Research titled ‘Vertical transmission of tomato viruses’, co-authored by JKI’s principal investigator in VIRTIGATION, Heiko Ziebell, is available online here and here since 19 September 2025. Natasa Mehle (NIB), Adrian Fox (Fera Science) and Antonio Tiberini (CREA) are the other authors of this review. There are no underlying datasets for this review. JKI will make the review fully open access after a 6-month embargo period, in line with Horizon 2020 open access rules for scientific publications. Find out more about VIRTIGATION’s scientific publications on our website here.

© Cover image: Shutterstock